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Auto-Mag® HMW DNA Isolation Kit

Magnetic bead-based kit specifically designed for high molecular weight DNA isolation, optimized for Long-Read Sequencing applications
Cat#: D036-01 Auto-Mag® HMW DNA Isolation Kit (96 Preps)
$280.00 USD
Quantity
Auto-Mag® HMW DNA Isolation Kit

Product Information

  • Consistent High-Quality Results: Reproducibly isolate high molecular weight genomic DNA (50–300+ kb) with reliable performance.
  • Versatile Sample Compatibility: Achieve high yields from various sample types, including bacteria, tissues, and bodily fluids.
  • Streamlined Protocols: User-friendly workflows efficiently remove RNA and inhibitors, ensuring sample purity.
  • Automation-Ready: Fully compatible with automated platforms; pre-designed scripts for Kingfisher™ and IsoPure™ systems are included for convenience.
  • Third-Generation Sequencing Compatible: Extracted HMW DNA is ideal for Nanopore and PacBio SMRT sequencing platforms.
  • Cost-Effective: Offers up to 50% savings compared to similar products, delivering exceptional value without compromising quality.

Auto-Mag® HMW DNA Isolation Kit is specifically designed to isolate high molecular weight (HMW) DNA ranging from 50 to 300+ kb. It enables efficient extraction of HMW DNA from a wide range of biological samples, including whole blood, bone marrow, saliva, buccal cells, cultured cells, tissues, and bacteria.

The kit employs advanced magnetic bead-based technology combined with chaotropic agents to gently isolate HMW DNA while effectively removing inhibitors. It includes all necessary reagents for the specified number of preparations, as well as RNase A for RNA removal and a specialized lytic enzyme mix for bacterial DNA extraction. The resulting HMW DNA is of exceptional quality and is particularly suitable for long-read sequencing platforms such as PacBio RSII/Sequel/Sequel II and Oxford Nanopore.

The size of the extracted HMW DNA can vary depending on the sample matrix, the quality of the starting material, and the processing parameters. High-quality starting materials are crucial for optimal results. While the kit is compatible with both fresh and frozen samples, minimizing freeze-thaw cycles is essential to maintain DNA integrity. To ensure high-quality genomic DNA recovery, avoid excessive pipetting during the extraction and isolation steps, except during the elution process.

The Auto-Mag® HMW DNA Isolation Kit eliminates the need for centrifugation or filtration by leveraging magnetic bead-based technology. This versatility makes it ideal for manual workflows while also allowing seamless integration with automated liquid handling workstations for improved efficiency and scalability.

 

HMW DNA Isolation Workflow

  1. Confirm the sample volume.
  2. Add Proteinase K to lysis the cells.
  3. Add Beads to bind DNA
  4. Separate beads from contaminants.
  5. Wash magnetic beads to remove contaminants.
  6. Elute DNA from magnetic beads.

Data & References

HMW DNA Isolation

Fig 1. HMW gDNA  were isolated from whole blood, saliva or cultured cell samples with AMD’s Auto-Mag® HMW DNA Isolation Kit. The isolated HMW DNA was analyzed  on Agilent’s TapeStation 2200.

Comparison of HMW DNA Purity & Yield

Figure 2. HMW Genomic DNA was extracted from 200 µl of whole blood using Auto-Mag® HMW DNA Isolation Kit and Competitor (M) HMW DNA Isolation Kit. Purity and concentration of DNA extracted by both kits was assessed using NanoDrop spectrophotometer. The measurements were determined in triplicate. The ratio of absorbance at 260 nm and 280 nm was used to assess protein contamination while the ratio of absorbance at 260 nm and 230 nm was used to assess the presence of contaminants. Both kits’ spectrophotometric measurements met the criteria for high quality DNA. In terms of determined recovery, Auto-Mag® HMW DNA Isolation Kit had a slightly better DNA yield compared to Competitor (M) kit.

Specifications

  • Isolation method: Magnetic bead-based technology
  • Sample sources: Blood, saliva, culture cells, tissue, bacteria, etc.
  • Starting amount: Up to 200 µl of blood or saliva, up to 10mg tissue, 1x106-9 cells,
  • DNA size range: 50-300+kb
  • Typical yield: Depend upon sample, (2-20μg)
  • Purity: 260/280 and 260/230 of >1.7
  • Elution volume: >50µL
  • Process method: Automated or manual
  • Downstream Application: Long Read Sequencing, NGS, Real-time PCR, PCR, Microarray
  • Shelf life: 12 months from date of delivery & 24 months from date of production.

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